Auto tasks order


I'm wondering where there is a way to improve the order of the auto tasks.
At the moment I think I'm running, a decrypt, a dedup and an auto filer. Flatview always seems a step behind though.
Is there a way to run these in a sensible order and then run flatview straight afterwards so it has an up to date list of new programs; where they are and what they are called etc.
Else flatview will list a file that's been moved and renamed and there for will not play, or misses displaying new files for an age.
Thank you