Both boxes now have 0.99-1 installed with Red brightness set at 39% (I set it at 40% but after rebooting it had changed to 39%).
I have set a couple of test timers on each and placed them in standby with different results see below,
Box 1 standby: Orange ring + clock display + timer icon
Box 2 standby: Orange ring + clock display + timer icon + TV icon + HD icon
Both boxes have just part woken up pre AR still with different results see below,
Box 1 AR part awake: Blue ring + clock display + timer icon + HDD usage icon
Box 2 AR part awake: Orange ring + clock display + timer icon + HDD usage icon + TV icon + HD icon + FULL icon
Both boxes have started recording still with different results see below,
Box 1 recording: Red ring + clock display + timer icon + HDD usage icon + REC icon
Box 2 recording: Red ring + clock display + timer icon + HDD usage icon + REC icon + TV icon + HD icon + FULL icon
So Box 1 seems normal, but Box 2 for some reason does not.
I should point out that Box 2 had 0.99-1 installed yesterday, and Box 1 had 0.99-1 installed this morning.
The humaxtv.log seems to be identical for both boxes, so no clues there.